techblog2022-06-12
A Summary of Phylogenetic Analysis
A summary of information and tools related to each step of phylogenetic analysis: Alignment, Trimming, Model Selection, and Tree Construction
techblog2022-05-20
Phylogenetic Analysis Using Maximum Likelihood with MUSCLE + trimAl + RAxML-ng-mpi
Protein-based phylogenetic analysis is a well-known and important method for studying gene function and evolution. In this post, we create a multiple alignment using MUSCLE, remove non-conserved regions with trimAl, and then perform phylogenetic analysis using the maximum likelihood method with RAxML.