techblog2022-05-20
Speeding Up GATK4 with Split Intervals
GATK4 is a time-consuming tool, but with enough compute power you can speed it up using split intervals. This post summarizes how to work with interval lists.
techblog2022-05-20
GATK4 RNA-seq Best Practice
The RNA-seq variant calling pipeline differs slightly from the genomic sequence pipeline. This post documents how to run the best practice workflow in bash.